Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNHKTKKLTVLAIMIALDVFLTPIFRIEGMAFMSSVVNIIAGVIMGPIYALVMALVTAFIRILTQAGVASVAPLAILGAGPGAFLAGWLYQFYAKDWMSWVGEFIGTGIIGALLSAPIMVWFWTWTADGNHEVLAKASAAQSIFLFMPRFIGATIIGGVIALLLLQGLKRVPVFMTIQALFKGEKVK
1JYT Chain:A ((1-163))
MAEDGPQK-QQLDMPLVLDQDLTKQMRLRVESLKQRGEKKQDGEKLLRPAESVYRLD------FIQQQKLQFDHWNVVLDKPGKVTITGTSQNWTPDL---------TNLMTRQLLDPAAIFWRK---EDSDAMDWNEADALE---FGERLSDLAKIRKVMYFLITFGEGVEPANLKASVVFNQL---
General information:
TITO was launched using:
RESULT:
Template:
1JYT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154154 for 1168 contacts (-132.0/contact) +
2D Compatibility (PS) -17211 + (NN) 553 + (LL) 2820
1D Compatibility (HY) -800 + (ID) 1400
Total energy: -170192.0 ( -145.71 by residue)
QMean score : 0.053
(partial model without unconserved sides chains):
PDB file :
Tito_1JYT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JYT-query.scw
PDB file :
Tito_Scwrl_1JYT.pdb
: