Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------MCAFFKTDTLKSC--AIDQNAGSKKSATLQIARRVKKGIGDFPKTEKGNSLI---VGYPQIGLSPFL----------FSHVSGHVLR--LPENKSTELWEDCQILNKGHCVEMRK--------
2ABO Chain:A ((6-136))
SGTYWATLITAFLKTVSKVEELDCVDSAVLVDVSKIITLTQEFRRHYDSVYRADYGPALKNWKRDLSKLFTSLFVDVINSGRIVGFFDVGRYVCEEVLCPGSWTEDHELLNDCMTHFFIENNLMNHFPLED
General information:
TITO was launched using:
RESULT:
Template:
2ABO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13232 for 663 contacts (-20.0/contact) +
2D Compatibility (PS) -10036 + (NN) -4364 + (LL) 0
1D Compatibility (HY) -5200 + (ID) 900
Total energy: -33732.0 ( -50.88 by residue)
QMean score : 0.247
(partial model without unconserved sides chains):
PDB file :
Tito_2ABO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ABO-query.scw
PDB file :
Tito_Scwrl_2ABO.pdb
: