Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNRDFRVRDQLETFGVRVSALIIENQKLLLIYAPHLDKYYLPGGALQVGEDSNKAVAREVLEEIGLHSQVGDLAYIVENQFNIKRHHYHSVEFLYFVNLLGQAPESIKEGTHKRHFVWLPIKELTKIDCNPNFLAQDLIEWPGHVVHKIVQN
2PQV Chain:B ((7-149))
---QDFRTKVDNTVFGVRATALIVQNHKLLV--TKDKGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVDGVSYHNIEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNIQLVPVFLKTALPDWEGQLRHIHLEE
General information:
TITO was launched using:
RESULT:
Template:
2PQV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100091 for 1046 contacts (-95.7/contact) +
2D Compatibility (PS) -14701 + (NN) 1721 + (LL) 488
1D Compatibility (HY) -13200 + (ID) 3000
Total energy: -128783.0 ( -123.12 by residue)
QMean score : 0.379
(partial model without unconserved sides chains):
PDB file :
Tito_2PQV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PQV-query.scw
PDB file :
Tito_Scwrl_2PQV.pdb
: