Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIIIGADTAGSKLKDVVKDFLVGENFEVVDVT-QDGQDFVDVTLAVAAEVNKQEENLGIVIDAYGAGPFMVATKIKGMVAAEVSDERSAYMTRGHNNSRMITMGSEIVGEGLAKNIAKGFVNGKYDGGRHQIRVDMLNKMC
4LFN Chain:C ((21-162))
MDVIIGADKDGFAMKEQVKKYLEEHQYRVADVTPEPAEDFVESSLAVTKKLLNSDAHKAIMFDRYGVGSAMASNKVKGMVTAVVEEENTAHMTAEHNGAKAIAIGTGITGYDRALVIIQRYLDTEYAGGRHQIRLDMLEKMI
General information:
TITO was launched using:
RESULT:
Template:
4LFN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73022 for 1206 contacts (-60.5/contact) +
2D Compatibility (PS) -14935 + (NN) -7012 + (LL) 0
1D Compatibility (HY) -11200 + (ID) 2950
Total energy: -109119.0 ( -90.48 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_4LFN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LFN-query.scw
PDB file :
Tito_Scwrl_4LFN.pdb
: