Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKSKNLRAALEKIDSTKAYSVEEAVALAKETNFAKFDATVEVSYNLNIDVKKADQQIRGAMVLPAGTGKTSRVLVFARGAKAEEAKAAGADFVGEDDLVAKIQGGWLDFDVVIATPDMMALVG-RLGRVLGPRNLMPNPKTGTVTMDVAKAVEESKGGKITYRADKAGNVQALIGKVSFDDAKLVDNFKAFNDVIVKAKPATAKGTYITNLSITTTQGVGIKVDPNSL
4QGB Chain:B ((1-216))
-------------KVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMVPSVRINPHS-
General information:
TITO was launched using:
RESULT:
Template:
4QGB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103358 for 1773 contacts (-58.3/contact) +
2D Compatibility (PS) -23970 + (NN) -18777 + (LL) 1456
1D Compatibility (HY) -15200 + (ID) 5150
Total energy: -164999.0 ( -93.06 by residue)
QMean score : 0.502
(partial model without unconserved sides chains):
PDB file :
Tito_4QGB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QGB-query.scw
PDB file :
Tito_Scwrl_4QGB.pdb
: