Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLIVLAGTIGAGKSSLAAALGQHLGTDVFYEAVDNNPVLDLYYQDPKKYAFLLQIFFLNKRFQSIKEAYKANNNVLDRSIFEDELFLTLNYKNGNVTKTELDIYKELLANMLEELEGMPKKRP--DLLVYIDVSFDKMLERIDKRGRS---------FEQVDSNPELYDYYKQVHSEYPEWY--ENYDVSPKIRIDGNKLDFVKNPEDLQHVLDTIDSELQKLDLL
2JAT Chain:B ((1-201))
MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVL---------LSFDIVIYLRVSTKTAISRIKKRGRSEELLIGEEYWETLNKNYE--EFYKQNVYDFPFFVVDAELDVKTQIELIMNKLNSI-----------------------
General information:
TITO was launched using:
RESULT:
Template:
2JAT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68787 for 1312 contacts (-52.4/contact) +
2D Compatibility (PS) -19221 + (NN) -9131 + (LL) 2348
1D Compatibility (HY) -18000 + (ID) 3300
Total energy: -116091.0 ( -88.48 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_2JAT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JAT-query.scw
PDB file :
Tito_Scwrl_2JAT.pdb
: