Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDVLIIEDDPMVEFIHRNYLEKLNYFQNIYSTASQTQAIAY--LNDIKIQLVLLDIHIKEGNGLELLKLLRNQHQNTEVIVISAANEAHTVKEAFHLGIVDYLIKPFTFERFESSIEKFLNHYHTFEADKIYQDNIDHFQKIDSGWLEGEVKLDEKGLSEITYQHILDAIQELEQPFTIQELAKCSQFSHVSVRKYIAYMEEKGLLTSQQIYTKVGRPYKVYKLIKKT
1NY5 Chain:B ((1-118))
MNVLVIEDDK----VFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRKLRKENELLRREKDLKEEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKE
General information:
TITO was launched using:
RESULT:
Template:
1NY5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91575 for 905 contacts (-101.2/contact) +
2D Compatibility (PS) -12446 + (NN) -6613 + (LL) 636
1D Compatibility (HY) -12400 + (ID) 2150
Total energy: -124548.0 ( -137.62 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_1NY5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NY5-query.scw
PDB file :
Tito_Scwrl_1NY5.pdb
: