Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKEYKVDKFVVGLPKNMNNTSGPRVEASQAYGDKITELFNLPVEYQDERLTTVQAERMLVEQADISRGKRKKVIDKLAAQLILQNYLDRMF
1NU0 Chain:A ((3-137))
GTLMAFDFGTKSIGVAVGQRITGTARPLPAIKAQD--GTPDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDERLSTVEA--------GGYRALNKGKVDSASAVIILESYMEQGY
General information:
TITO was launched using:
RESULT:
Template:
1NU0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51280 for 921 contacts (-55.7/contact) +
2D Compatibility (PS) -14000 + (NN) -5365 + (LL) 1224
1D Compatibility (HY) -8800 + (ID) 2100
Total energy: -80321.0 ( -87.21 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_1NU0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NU0-query.scw
PDB file :
Tito_Scwrl_1NU0.pdb
: