Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MITYQEFLSEKDSLSFEVCTQYFQDLVNSLDEVDEYSIIYWKDFITASLIYSQSR---------GEWLLLS---REEKHAKDDTRTTKHNKFIYTLKIYIAYSKQKGYE--------FPWFESIK--DNRKQLGDLACYIAYIYAVNAR
2RDC Chain:A ((21-148))
----------------ETTMGRYKKVIEITG-HDEVAAKLLEGLIDAGTRYFSKVVEMEHRMASARFRLDGEELRELTETLDRSRRLAHESLISSLHVFNRYIVKEYGEELKEAGIEGGIFPKPEANRDRIAIADWAGELLTGIYENRH
General information:
TITO was launched using:
RESULT:
Template:
2RDC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44047 for 644 contacts (-68.4/contact) +
2D Compatibility (PS) -10763 + (NN) 1270 + (LL) 1508
1D Compatibility (HY) -1200 + (ID) 1000
Total energy: -54232.0 ( -84.21 by residue)
QMean score : 0.301
(partial model without unconserved sides chains):
PDB file :
Tito_2RDC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RDC-query.scw
PDB file :
Tito_Scwrl_2RDC.pdb
: