Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence----------------------------MATYNAIIYSGGYSQTLRDFAGWTGDLLTTI-QDMKLHAQEFNSPYDAAMKIIGNMYQ--------------------FSLDDLFSDVDAINLA----NKTSVGANAQPLNIAIRDYYSNNDCMNRF-------TQFV-NNRFDGSLDKIFSEAEYYLNTNLDP---VVVPIRLAFKRAFDVEDYSEEIGKITAQAFRDVIEKKMISE
3P42 Chain:A ((3-236))QGMVTIYLPGEQQTLSVGPVENVAQLVTQPQLRDRLWWPGALLTDSAAKAKALKDYQHVMAQLASWEAEADDDVAATIKSVRQQLLNLNITGRLPVKLDPDFVRVDENSNPPLVGDYTLYTVQRPVTITLLGAVSGAGQLPWLAGRSVTDYLQDHPRLAGADKNNVMVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFSAH-VLPEKYADLNDQIVSVLTQRVPELEHHHHHH-


General information:
TITO was launched using:
RESULT:

Template: 3P42.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 587 -60855 -103.67 -357.97
target 2D structure prediction score : 0.45
Monomeric hydrophicity matching model chain A : 0.58

3D Compatibility (PKB) : -103.67
2D Compatibility (Sec. Struct. Predict.) : 0.45
1D Compatibility (Hydrophobicity) : 0.58
QMean score : 0.144

(partial model without unconserved sides chains):
PDB file : Tito_3P42.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3P42-query.scw
PDB file : Tito_Scwrl_3P42.pdb: