Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGREYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSPNGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDP----------EYVTDINKAFIQTLFP--GAVSQGLFTPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQL--ALDNKVVAFGYSQSATIINNYINSLMAMG--SPNPDDISFVMIGSGNNPVGGLLARFP-----GF-----YIPFL---DVPFNGATPA---NSPYPTHIYTAQYDGIAHAPQFPLR---ILSDINAFM-GYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLFSIPNPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQPQVTLLSLMSGGLGNILHLIPPPVFT |
| 3AJA Chain:A ((72-306)) | ----------------------------------------------------------------------------------------------------------------------------------------DCPDVMMVSIPGTWESSPTDDPFNPTQFPLSLMSNISKP-LAEQFGPDRLQVYTTPYTAQFHNPFAADKQMSYNDSRAEGMRTTVKAMTDMNDRCPLTSYVIAGFSQGAVIAGDIASDIGNGRGPVDEDLVLGVTLIADGRRQMGVGQDVGPNPAGQGAEITLHEVPALSALGLTMTGPRPGGFGALDNRTNQICGSGDLICSAPEQAFSVFNLPKTLETLSG---PVHALYNTP----------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3AJA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -89566 for 1558 contacts (-57.5/contact) +
2D Compatibility (PS) -21339 + (NN) -19660 + (LL) 17172
1D Compatibility (HY) -800 + (ID) 1800
Total energy: -115993.0 ( -74.45 by residue)
QMean score : 0.318
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