Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSESDAANTEPEVLVEQRDRILIITINRPKAKNAVNAAVSRGLADAMDQLDGDAGLSVAILTGGGGSFCAGMDLKAFARGENVVVEGRGLGFTERPPTKPLIAAVEGYALAGGTELALAADLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDNLPAERAHELGLVNVLAEPGTALDAAIALAEKITANGPLAVVATKRIITESRGWSPDTMFAEQMKILVPVFTSNDAKEGAIAFAERRRPRWTGT
3TRR Chain:F ((8-255))
------------EVLIEQRDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEAVLSE-RGLGFTNVPPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKITANGPLAVAATKRIIIESASWAPEEAFAKQGEILMPIFVSEDAKEGAKAFAEKRAPVWQG-
General information:
TITO was launched using:
RESULT:
Template:
3TRR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124154 for 2096 contacts (-59.2/contact) +
2D Compatibility (PS) -27274 + (NN) -15520 + (LL) 256
1D Compatibility (HY) -25600 + (ID) 8600
Total energy: -200892.0 ( -95.85 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_3TRR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TRR-query.scw
PDB file :
Tito_Scwrl_3TRR.pdb
: