Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------------MKKMMQGAAAL--IALVGAGESMALEWMSNSVGFRYGQQFTNPNNPDKFAKRIYSFTHADGYRYGSNFFNLDVFLSDNRDPRKGTDHGGSEVYAVYRH--QLYAS----------RVFDRPLGTGLVKDYAFTLGFDASRNNNLASAKK--RALVFGPTLKFNGPGVLDLSLLYYREKNHFGVPG---------ARHP-----DHTFDTTYMLNLTWMRPFKVGN-HAAKFQGFVNYVGDKGEDYNDKHTAAETLVRTA------LMVAALPGDKRQPNLWLGVGYEYWHNKFGVDGGTGSRTSTPTLNMEFTF |
| 4LK4 Chain:A ((10-350)) | RIINGSNANSAEWPSIVALVKRGADAYQGQFCGGSFLGGRYVLTAAHCFD-SRSAASVDVIIGAYDLNNSSQGERIAAQKIYRHLS-YSPSNLLNDIAIVELAQTSSLPAITLAGPATRTSLPALTPLTVAGWGITFTPILQEVDVDLVSQSLCQIVMQHGISSDPNSTNFCAARLTQGDAGGPIVVKTGREQLGI-VSWGDEQGTYGVYTNVSYFRDWITKHTNQLSYDQVANLGIRPLGKVSQSFTYTNLDANALTYTGNTFSSLPADFSVLSDGCSTKVTLATGESCSVEVAVDAQHYRQYQYDFELIFSY---------AGGSKRATSRIQLD-T- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LK4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -37482 for 1915 contacts (-19.6/contact) +
2D Compatibility (PS) -26863 + (NN) 4190 + (LL) 328
1D Compatibility (HY) -3600 + (ID) 2100
Total energy: -65527.0 ( -34.22 by residue)
QMean score : 0.126
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