Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKCLLLALALTCGAQALIVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEILLQKWENGECAQKKIIAEKTKIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEALEKFDKALKALPMHIRLSFNPTQLEEQCHI
2R56 Chain:B ((4-162))
-------------------TQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEILLQKWENGECAQKKIIAEKTKIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEALEKFDKALKALPMHIRLSFNPTQLEEQCHI
General information:
TITO was launched using:
RESULT:
Template:
2R56.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93967 for 1195 contacts (-78.6/contact) +
2D Compatibility (PS) -16311 + (NN) 559 + (LL) 2412
1D Compatibility (HY) -22800 + (ID) 7950
Total energy: -138057.0 ( -115.53 by residue)
QMean score : 0.405
(partial model without unconserved sides chains):
PDB file :
Tito_2R56.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2R56-query.scw
PDB file :
Tito_Scwrl_2R56.pdb
: