Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLVLAVLLTVAAADSGISPRAVWQFRKMIKCVIPGSDPFLEYNNYGCYCGLGGSGTPVDELDKCCQTHDNCYDQAKKLDSCKFLLDNPYTHTYSYSCSGSAITCSSKNKECEAFICNCDRNAAICFSKAPYNKAHKNLDTKKYCQS
4O1Y Chain:A ((1-124))
----------------------ALWQFRSMIKCAIPGSHPLMDFNNYGCYCGLGGSGTPVDELDRCCETHDNCYRDAKNLDSCKFLVDNPYTESYSYSCSNTEITCNSKNNACEAFICNCDRNAAICFSKAPYNKEHKNLDTKKYC--
General information:
TITO was launched using:
RESULT:
Template:
4O1Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70090 for 908 contacts (-77.2/contact) +
2D Compatibility (PS) -13048 + (NN) -6481 + (LL) 2308
1D Compatibility (HY) -17200 + (ID) 5050
Total energy: -109561.0 ( -120.66 by residue)
QMean score : 0.416
(partial model without unconserved sides chains):
PDB file :
Tito_4O1Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4O1Y-query.scw
PDB file :
Tito_Scwrl_4O1Y.pdb
: