Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVLLLLAVVIMAFGSIQVQGSLLEFGQMILFKTGKRADVSYGFYGCHCGVGGRGSPKDATDWCCVTHDCCYNRLEKRGCGTKFLTYKFSYRGGQISCSTNQDSCRKQLCQCDKAAAECFARNKKSYSLKYQFYPNKFCKGKTPSC
3U8D Chain:B ((1-124))
---------------------NLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCA-KQDSCRSQLCECDKAAATCFARNKTTYNKKYQYYSNKHCRGSTPRC
General information:
TITO was launched using:
RESULT:
Template:
3U8D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49424 for 934 contacts (-52.9/contact) +
2D Compatibility (PS) -13798 + (NN) -11727 + (LL) 2700
1D Compatibility (HY) -13600 + (ID) 4500
Total energy: -90349.0 ( -96.73 by residue)
QMean score : 0.312
(partial model without unconserved sides chains):
PDB file :
Tito_3U8D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U8D-query.scw
PDB file :
Tito_Scwrl_3U8D.pdb
: