Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATRSPGVVISDDEPGYDLDLFCIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKSYCNDQSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKAKYKA
2VFA Chain:B ((17-226))
--------VFVKDDDGYDLDSFMIPAHYKKYLTKVLVPNGVIKNRIEKLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLK---------DIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVACLFIKRTPLWNGFKADFVGFSIPDHFVVGYSLDYNEIFRDLDHCCLVNDEGKKKYKA
General information:
TITO was launched using:
RESULT:
Template:
2VFA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -191439 for 1590 contacts (-120.4/contact) +
2D Compatibility (PS) -22371 + (NN) -10613 + (LL) 292
1D Compatibility (HY) -30800 + (ID) 8000
Total energy: -262931.0 ( -165.37 by residue)
QMean score : 0.597
(partial model without unconserved sides chains):
PDB file :
Tito_2VFA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VFA-query.scw
PDB file :
Tito_Scwrl_2VFA.pdb
: