Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVRPLNCIVAVSQNMGIGKNGDLPWPPLRNEFQYFQRMTTVSSVEGKQNLVIMGRKTWFSIPEKNRPLKDRINIVLSRELKEPPKGAHFLAKSLDDALELIEDPELTNKVDVVWIVGGSSVYKEAMNKPGHVRLFVTRIMQEFESDAFFPEIDFEKYKLLPEYPGVPLDVQEEKGIKYKFEVYEKNN
4M6L Chain:A ((2-187))
-VGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEKND
General information:
TITO was launched using:
RESULT:
Template:
4M6L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115799 for 1406 contacts (-82.4/contact) +
2D Compatibility (PS) -20224 + (NN) -12202 + (LL) 208
1D Compatibility (HY) -25200 + (ID) 8100
Total energy: -181317.0 ( -128.96 by residue)
QMean score : 0.715
(partial model without unconserved sides chains):
PDB file :
Tito_4M6L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M6L-query.scw
PDB file :
Tito_Scwrl_4M6L.pdb
: