Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKPNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYENKIIDDNIIHASSIESSLNLVSDVERVFIIGGAEIYNELINNSLVSHLLITEIEHPSPESIEMDTFLKFPLESWTKQPKSELQKFVGDTVLEDDIKEGDFTYNYTLWTRK
3QLW Chain:B ((3-192))
--KPNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYENEIIDDNIIHASSIESSLNLVSDVERVFIIGGAEIYNELINNSLVSHLLITEIEHPSPESIEMDTFLKFPLESWTKQPKSELQKFVGDTVLEDDIKEGDFTYNYTLWTRK
General information:
TITO was launched using:
RESULT:
Template:
3QLW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150286 for 1427 contacts (-105.3/contact) +
2D Compatibility (PS) -20318 + (NN) -6304 + (LL) 180
1D Compatibility (HY) -27200 + (ID) 9450
Total energy: -213378.0 ( -149.53 by residue)
QMean score : 0.783
(partial model without unconserved sides chains):
PDB file :
Tito_3QLW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QLW-query.scw
PDB file :
Tito_Scwrl_3QLW.pdb
: