Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVRPLNCIVAVSQNMGIGKNGDLPWPPLRNEFKYFQRMTTTSSVEGKQNLVIMGRKTWFSIPEKNRPLKDRINIVLSRELKEPPRGAHFLAKSLDDALRLIEQPELASKVDMVWIVGGSSVYQEAMNQPGHLRLFVTRIMQEFESDTFFPEIDLGKYKLLPEYPGVLSEVQEEKGIKYKFEVYEKKD
3F8Y Chain:A ((2-187))
-VGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFKRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEKND
General information:
TITO was launched using:
RESULT:
Template:
3F8Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117187 for 1406 contacts (-83.3/contact) +
2D Compatibility (PS) -19898 + (NN) -6932 + (LL) 208
1D Compatibility (HY) -26400 + (ID) 8300
Total energy: -178509.0 ( -126.96 by residue)
QMean score : 0.683
(partial model without unconserved sides chains):
PDB file :
Tito_3F8Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F8Y-query.scw
PDB file :
Tito_Scwrl_3F8Y.pdb
: