Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNVPHKSSLPEGIRPGTVLRIRGLVPPNASRFHVNLLCGEEQGSDAALHFNPRLDTSEVVFNSKEQGSWGREERGPGVPFQRGQPFEVLIIASDDGFKAVVGDAQYHHFRHRLPLARVRLVEVGGDVQLDSVRIF
5GAL Chain:B ((4-135))
----PHKSSLPEGIRPGTVLRIRGLVPPNASRFHVNLLCGEEQGSDAALHFNPRLDTSEVVFNSKEQGSWGREERGPGVPFQRGQPFEVLIIASDDGFKAVVGDAQYHHFRHRLPLARVRLVEVGGDVQLDSVRIF
General information:
TITO was launched using:
RESULT:
Template:
5GAL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81305 for 978 contacts (-83.1/contact) +
2D Compatibility (PS) -14018 + (NN) -5810 + (LL) 292
1D Compatibility (HY) -16800 + (ID) 6600
Total energy: -124241.0 ( -127.04 by residue)
QMean score : 0.700
(partial model without unconserved sides chains):
PDB file :
Tito_5GAL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5GAL-query.scw
PDB file :
Tito_Scwrl_5GAL.pdb
: