Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
1PIN Chain:A ((6-163))
-----KLPPGWEKRMSRSSGRVYYFNHITNASQWERPSG-----GKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
General information:
TITO was launched using:
RESULT:
Template:
1PIN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19933 for 1152 contacts (-17.3/contact) +
2D Compatibility (PS) -16696 + (NN) -12173 + (LL) 148
1D Compatibility (HY) -15600 + (ID) 7650
Total energy: -71904.0 ( -62.42 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_1PIN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PIN-query.scw
PDB file :
Tito_Scwrl_1PIN.pdb
: