Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKLSVFFIFLFCSIATAAESLPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNESKKPSKPSN
2DOO Chain:B ((4-219))
---------------------LPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNE---------
General information:
TITO was launched using:
RESULT:
Template:
2DOO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95586 for 1902 contacts (-50.3/contact) +
2D Compatibility (PS) -23809 + (NN) -14323 + (LL) 2032
1D Compatibility (HY) -31200 + (ID) 10800
Total energy: -173686.0 ( -91.32 by residue)
QMean score : 0.711
(partial model without unconserved sides chains):
PDB file :
Tito_2DOO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DOO-query.scw
PDB file :
Tito_Scwrl_2DOO.pdb
: