Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YSLFPNSPKWTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKRSNSRKK
1MMP Chain:B ((1-166))
YSLFPNSPKWTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGK-------
General information:
TITO was launched using:
RESULT:
Template:
1MMP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65895 for 1301 contacts (-50.6/contact) +
2D Compatibility (PS) -18094 + (NN) -13955 + (LL) 192
1D Compatibility (HY) -21200 + (ID) 8300
Total energy: -127252.0 ( -97.81 by residue)
QMean score : 0.836
(partial model without unconserved sides chains):
PDB file :
Tito_1MMP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MMP-query.scw
PDB file :
Tito_Scwrl_1MMP.pdb
: