Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTKPLQGPPAPPGTPTPPPGGKDREAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFETQEGFMLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQEILEAELHFPAHVSPDCCALIRRCLAPKPSSRPSLEEILLDPWMQTPAEDVPLNPSKGGPAPLAWSLLP
4X7Q Chain:A ((33-288))
-------------------------------YRLGPLLGKGGFGTVFAGH----RLQVAIKVIPR----------------LEVALLWKVG----HPGVIRLLDWF-----FMLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLRRGCAKLIDFGSGA----------DGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQEILEAELHFPAHVSPDCCALIRRCLAPKPSSRPSLEEILLDPWMQ------------------------
General information:
TITO was launched using:
RESULT:
Template:
4X7Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -173520 for 1766 contacts (-98.3/contact) +
2D Compatibility (PS) -23249 + (NN) -14309 + (LL) 1204
1D Compatibility (HY) -35200 + (ID) 10850
Total energy: -255924.0 ( -144.92 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_4X7Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4X7Q-query.scw
PDB file :
Tito_Scwrl_4X7Q.pdb
: