Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVSCGQVSSALSPCISYARGN----GAS--------PSAACCSGVRSLASSARSTADKQAACKCIKSAAAGLN--------AGKAAGIPTKCGVSVPYAISSSVDCSKIR
1S6D Chain:A ((19-97))
--------EMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLD--------EKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM---------------
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33886 for 367 contacts (-92.3/contact) +
2D Compatibility (PS) -6003 + (NN) 224 + (LL) 1676
1D Compatibility (HY) -3600 + (ID) 600
Total energy: -42189.0 ( -114.96 by residue)
QMean score : 0.310
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: