Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VVQCGQVTQLMAPCMPYLSGAPGMTPYGICCNSLGVLNQLAASTADRVAACNCVKAAASGGFPAVDFSRAAALPAACGLAINFAVTPNMDCNQVTDEP
1AFH Chain:A ((1-93))
AISCGQVASAIAPCISYARGQGS-GPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAA-GVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN---
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91698 for 764 contacts (-120.0/contact) +
2D Compatibility (PS) -9897 + (NN) -5146 + (LL) -76
1D Compatibility (HY) -5600 + (ID) 1850
Total energy: -114267.0 ( -149.56 by residue)
QMean score : 0.361
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: