Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VVQCGQVTQLMAPCMPYLSGAPGMTPYGICCNSLGVLNQLAASTADRVAACNCVKAAASGFPAVDFSRAAALPAACGLAINFAVTPNMDCNQVTDEP
1SIY Chain:A ((1-91))
-MTCGQVQGNLAQCIGFLQKG-G-VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSIN---
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82123 for 700 contacts (-117.3/contact) +
2D Compatibility (PS) -9156 + (NN) -2832 + (LL) 148
1D Compatibility (HY) -6800 + (ID) 1500
Total energy: -102263.0 ( -146.09 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: