Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSAARTTADRRTACNCLKNAARGIK------G----LNAGNAASIPSKCGVSVPYTISASIDCSRVR
1PNB Chain:B ((11-67))
------------------------REQCCNELYQE--------DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQI-------------
General information:
TITO was launched using:
RESULT:
Template:
1PNB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2096 for 256 contacts (-8.2/contact) +
2D Compatibility (PS) -4863 + (NN) -1563 + (LL) 1960
1D Compatibility (HY) -2000 + (ID) 600
Total energy: -9162.0 ( -35.79 by residue)
QMean score : 0.190
(partial model without unconserved sides chains):
PDB file :
Tito_1PNB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PNB-query.scw
PDB file :
Tito_Scwrl_1PNB.pdb
: