Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QPPGGCVPQL---NRLLACRAYLVPGA-------AD-----PSADCCSALSSISRDCACSTMG-----------------IINSIPSRCNIGRVNCSA
1S6D Chain:A ((10-102))
----GCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMSQPCQ-
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48824 for 392 contacts (-124.6/contact) +
2D Compatibility (PS) -6227 + (NN) 356 + (LL) -188
1D Compatibility (HY) -6800 + (ID) 800
Total energy: -62483.0 ( -159.40 by residue)
QMean score : 0.474
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: