Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VCDMDNDDFMACQPAAAATTD---P------QPAPSEACCATLGKADLRCLCSYKNSPWLSLY-N----IDPKRAMELPAKCGLTTPPDC
1S6D Chain:A ((20-101))
-------MLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMS-QPC
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18611 for 449 contacts (-41.4/contact) +
2D Compatibility (PS) -7015 + (NN) -164 + (LL) 8
1D Compatibility (HY) -2800 + (ID) 650
Total energy: -29232.0 ( -65.10 by residue)
QMean score : 0.304
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: