Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
EGAGECGRSSPDRMALRMAPCISAADEPDSAPSSSCCSAVHTLGKSPSCLCAVMLSGT---AK-MAG-----IKPEVAITIPKRCNMADRPVGYKCGDYTLP
3OB4 Chain:A ((428-483))
--------------------------------QERCCNELNEFENNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLR--------------
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22816 for 240 contacts (-95.1/contact) +
2D Compatibility (PS) -4558 + (NN) 1310 + (LL) 1016
1D Compatibility (HY) -2800 + (ID) 350
Total energy: -28198.0 ( -117.49 by residue)
QMean score : 0.144
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: