Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGKCGKTPAEKVAL---KLAPCAKAAQDPGA------------RPPAACCAAVRDIGTHQSHACLCAVLLSSTVRRS-G----VKPEVAITIPKRCKLANRPVGYKCGAYTLPSLQG
1S6D Chain:A ((10-97))
-------GCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL----DEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM------------------
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31648 for 474 contacts (-66.8/contact) +
2D Compatibility (PS) -7027 + (NN) -2590 + (LL) 440
1D Compatibility (HY) -3600 + (ID) 500
Total energy: -44925.0 ( -94.78 by residue)
QMean score : 0.260
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: