Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AAGTECQNDVEV--LKTTCYKFVEKD---GPKL----------QPSPDCCTSMKGVNVPCVCTYLGSPGVRDNI------------NMDKVFYVTKQCGIAIPGNCGGSKV
1SM7 Chain:A ((3-106))
---QKCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTL-KQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTCPF---
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42006 for 557 contacts (-75.4/contact) +
2D Compatibility (PS) -7474 + (NN) 2508 + (LL) 172
1D Compatibility (HY) -1600 + (ID) 650
Total energy: -49050.0 ( -88.06 by residue)
QMean score : 0.366
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: