Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVSNCGQVVSYLAPCITYATGR----APG--------PNGGCCSGVRSLNAAASTTADRQATCSCLKQQTSGMG-GI----KPDLVAGIPSKCGVNIPYAIKPSTDCTKVR
1S6D Chain:A ((19-97))
---------EMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLD--------EKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM---------------
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31508 for 389 contacts (-81.0/contact) +
2D Compatibility (PS) -6271 + (NN) 993 + (LL) 2032
1D Compatibility (HY) -3600 + (ID) 450
Total energy: -38804.0 ( -99.75 by residue)
QMean score : 0.152
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: