Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LSCGQVQSGLAPCLPYLQ----GRGP-------LGSCCGGVKGLLGAAKSLSDRKTACTCLKSAANAIK---G---------I---------DMGKAAGLPGACGVNIPYKISPSTDCSKVQ
1B1U Chain:A ((15-109))
-------NPLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAI--------PAYCRCEAVRILMDGVVTPSGQHEGRLLQDLPGCPRQVQRAFAPKLVTEVECNLATIH------------
General information:
TITO was launched using:
RESULT:
Template:
1B1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42108 for 386 contacts (-109.1/contact) +
2D Compatibility (PS) -6509 + (NN) -1712 + (LL) 1392
1D Compatibility (HY) -3600 + (ID) 550
Total energy: -53087.0 ( -137.53 by residue)
QMean score : 0.280
(partial model without unconserved sides chains):
PDB file :
Tito_1B1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B1U-query.scw
PDB file :
Tito_Scwrl_1B1U.pdb
: