Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GGVVEICNVSKDDLMPCKPAVTQP-----PA-------QPVQACCSVLSTANLTCFCEFGNNYPSL-L--RMFGIDPDLAKALPGECKLNSPPGC
1S6D Chain:A ((19-101))
-----------EMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM-SQPC
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29032 for 458 contacts (-63.4/contact) +
2D Compatibility (PS) -6700 + (NN) 1454 + (LL) 524
1D Compatibility (HY) -3600 + (ID) 850
Total energy: -38204.0 ( -83.41 by residue)
QMean score : 0.210
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: