Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ALTCGTVTSALSPCITYVRN---GGSV-----------PASCCQGVAALNSAAKTTADRQAACSCLKSALSSVS----GI-------QPSLASSLPGKCGVSIPYQISPSTDCSKVK
2LVF Chain:A ((16-101))
--------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM--------DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS---------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30947 for 348 contacts (-88.9/contact) +
2D Compatibility (PS) -6015 + (NN) 1004 + (LL) 1652
1D Compatibility (HY) -5600 + (ID) 750
Total energy: -40656.0 ( -116.83 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: