Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------VTCSPAQLSPCVGAITSSSPPSGLCCSKVRQQKPCLCQYMKN-PYLRKFVNTPNAKKVASQCRTPFPRC---
3L9A Chain:X ((9-88))
RDFFVITNSEYTFAGVHYAK--GAVLHVSPTQKRAFWVIADQENFIKQVNKNIEYVEKNASPAFLQRIVEIYQVKFEGKNVH
General information:
TITO was launched using:
RESULT:
Template:
3L9A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13727 for 374 contacts (-36.7/contact) +
2D Compatibility (PS) -7138 + (NN) -2298 + (LL) 248
1D Compatibility (HY) -2800 + (ID) 600
Total energy: -26315.0 ( -70.36 by residue)
QMean score : 0.181
(partial model without unconserved sides chains):
PDB file :
Tito_3L9A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L9A-query.scw
PDB file :
Tito_Scwrl_3L9A.pdb
: