Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGACGKTSPDQEAMKLAPCAMAAQD---AKA----------AVSDSCCAQVRSIGQNPSCLCSVMLSDMAK------AS-G----IKAEIAITIPKRCNIANRPVGYKCGDYTLP
2LVF Chain:A ((16-101))
-------------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM--DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS--------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24192 for 349 contacts (-69.3/contact) +
2D Compatibility (PS) -6429 + (NN) 208 + (LL) 232
1D Compatibility (HY) -3200 + (ID) 850
Total energy: -34231.0 ( -98.08 by residue)
QMean score : 0.201
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: