Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGKTPIRSAAA---SLSPCLTAVGNVRA------------SVPPACCSKVGALIKTAPKCLCAVLLSPLA--M-QAG--IKPGIAITIPKRCNIKNRPVGKKCGRYTVP
1S6D Chain:A ((9-97))
------SGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL---DEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM--------------
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50172 for 478 contacts (-105.0/contact) +
2D Compatibility (PS) -6759 + (NN) 2355 + (LL) 552
1D Compatibility (HY) -5200 + (ID) 700
Total energy: -59924.0 ( -125.36 by residue)
QMean score : 0.227
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: