Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
TWEVKMAGAELSDAQCKEERNLGINACKPVVYGKLPSPECCQRVRVTHLECVCPVISPQLAALI--------DINRAVRLIE----GCGRRVPRHYKCGSITTP
1PNB Chain:B ((12-69))
-------------------------------------EQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGT---------
General information:
TITO was launched using:
RESULT:
Template:
1PNB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23026 for 255 contacts (-90.3/contact) +
2D Compatibility (PS) -4592 + (NN) 1730 + (LL) 2488
1D Compatibility (HY) -1200 + (ID) 400
Total energy: -25000.0 ( -98.04 by residue)
QMean score : 0.175
(partial model without unconserved sides chains):
PDB file :
Tito_1PNB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PNB-query.scw
PDB file :
Tito_Scwrl_1PNB.pdb
: