Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QAPAPEPTAEAPGPDCFTNL--LSLSDCLTYVEAGSNLT--------KPE-------KPCCPELAGLVESTPQCLCYLLDKNATSSY----GF---NIDMNRALNLPTVCKVSTPPVSLCSG
1W2Q Chain:A ((5-112))
----RERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME-NTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFR---------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39392 for 493 contacts (-79.9/contact) +
2D Compatibility (PS) -8823 + (NN) -5745 + (LL) 340
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -57570.0 ( -116.77 by residue)
QMean score : 0.371
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: