Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QPSPNPSCGAQLS--QLGPCARYSV----PPMPGQA-LPA-----------PGPECCSALGSVSRDCACGAID----------------------IINSLPAKCGLPRISCQ
1PSY Chain:A ((13-119))
--SSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV---RCM
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24755 for 465 contacts (-53.2/contact) +
2D Compatibility (PS) -7102 + (NN) -3969 + (LL) 144
1D Compatibility (HY) -5200 + (ID) 900
Total energy: -41782.0 ( -89.85 by residue)
QMean score : 0.368
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: