Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DDDTTLDCDSQVN--GLVGNCMTAVLI-----GTK---------PSSKCCKFVRAAQPDCVCPKITGDVTKVL-------------KLSTALKIAKRCNRELPHNYQCGSYTLP
2LVF Chain:A ((2-101))
-AEAQEECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17192 for 434 contacts (-39.6/contact) +
2D Compatibility (PS) -6905 + (NN) 344 + (LL) 172
1D Compatibility (HY) -3600 + (ID) 650
Total energy: -27831.0 ( -64.13 by residue)
QMean score : 0.332
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: