Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DDDATLDCDSQVN--GLAGNCMTAVL----I-GTK---------PSSKCCKFVRSAQLDCLCPKITKDVTKMIT----------ERLLSTALKIAKQCNWELPHNYQCGSYTFP
2LVF Chain:A ((4-101))
---AQEECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23575 for 433 contacts (-54.4/contact) +
2D Compatibility (PS) -7206 + (NN) -1219 + (LL) -24
1D Compatibility (HY) -3600 + (ID) 750
Total energy: -36374.0 ( -84.00 by residue)
QMean score : 0.373
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: