Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQLPQGCGPKLG---VLLPCLPFLQGQGS---------------NPTQPCCNGLETVVKLNPACLCALVNS---Q------LG-NRIN--ITLALSLPSLCNLAGVTIDLCNPTGKFSFKI
1SM7 Chain:A ((3-106))
----QKCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE---DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQ--IGTCPF--------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63519 for 479 contacts (-132.6/contact) +
2D Compatibility (PS) -7241 + (NN) 2228 + (LL) 1400
1D Compatibility (HY) -4800 + (ID) 950
Total energy: -72882.0 ( -152.15 by residue)
QMean score : 0.225
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: