Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QDCNGLVT--TVISQCSGSYGNG----SP---------PSAGCCRAARAVSNGCLCPKVTPQIAAAV-------NKQRIQAMASACNRPLPRTCGALQF
1S6D Chain:A ((10-101))
-GCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM-SQPC-----
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33200 for 489 contacts (-67.9/contact) +
2D Compatibility (PS) -6988 + (NN) 244 + (LL) 696
1D Compatibility (HY) -6400 + (ID) 550
Total energy: -46198.0 ( -94.47 by residue)
QMean score : 0.275
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: