Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DQVCKGDFG--SLVEQCLQYVQKP----GPKT------PPSEGCCNAINTVDIPCVCQHLPPVVGDIV-------SLEKVAFVLRACGKPLEPGTKCGNYTVPPAV
1S6D Chain:A ((9-97))
-SGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM----------------
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51628 for 473 contacts (-109.2/contact) +
2D Compatibility (PS) -7151 + (NN) -3047 + (LL) 204
1D Compatibility (HY) -5600 + (ID) 500
Total energy: -67722.0 ( -143.18 by residue)
QMean score : 0.340
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: