Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QPVCPLNQSELGICVNVLGLISITTSNAAQCCSILAGLNNVSLVSVCACEAVRLNILNLLGITVNLNLRLNGLLGLCRLPVQPGFNCLL-
1HYP Chain:? ((6-80))
-PSCP----DLSICLNILGGS---LGTVDDCCALIGGLG-DIEAIVCLCIQLRA-----LGI-LNLNRNLQLILNSCGRSYPSNATCPRT
General information:
TITO was launched using:
RESULT:
Template:
1HYP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83500 for 494 contacts (-169.0/contact) +
2D Compatibility (PS) -7802 + (NN) -4358 + (LL) 904
1D Compatibility (HY) -5200 + (ID) 1350
Total energy: -101306.0 ( -205.07 by residue)
QMean score : 0.422
(partial model without unconserved sides chains):
PDB file :
Tito_1HYP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HYP-query.scw
PDB file :
Tito_Scwrl_1HYP.pdb
: